PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G13530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 403aa    MW: 44310.8 Da    PI: 4.359
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G13530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.51.7e-2687152171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   r+++sL+llt+kfl+ll+ ++ giv+ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  OB12G13530.1  87 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 152
                   6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-2885153IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-1687150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-3587152IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2389152IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.63E-49163269No hitNo description
SuperFamilySSF1440746.54E-34164269No hitNo description
PfamPF164213.3E-34168267IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTEAVLVRTP LKRKHDREEN EAAESNDWMM SPGYANAAGS PVPTPLSGKG SKAFAKSKAA  60
KGQKSCPQTP LCASSPGNPA TPVGGCRYDS SLGLLTKKFL NLLKGAPGGI VDLNNAAETL  120
EVQKRRIYDI TNVLEGIGLI EKKLKNNIRW KGIDDSRPGE VSDDMSILRA DIEALSLQEH  180
SLDQQISEMR DKLRGLTEDE NNQKWLYVTE DDIKSLPCFQ NQTLIAIKAP HGTTLEVPDP  240
DEVNDYPQRR YRIVLRSTMG PIDVYLVSQF EEMSGMETPP RTVQTVSMDS LENPMTPLAA  300
ESNKAAETEP NIQDGLLMPS DAPSSSQDIG GMMKIVPSEL DTDADYWLLS DTGVSITDMW  360
KTAPEVEWEG IEKFNAEDFL EVSTPRQQDK PSSDIMDGDS CVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-2379153274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0592330.0AK059233.1 Oryza sativa Japonica Group cDNA clone:001-024-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698223.10.0PREDICTED: transcription factor E2FA-like
SwissprotQ9FNY01e-121E2FA_ARATH; Transcription factor E2FA
TrEMBLJ3NBJ50.0J3NBJ5_ORYBR; Uncharacterized protein
STRINGOB12G13530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-106E2F transcription factor 3